Bioinformatics and Data Science in Biotechnology Lab
- Writing and reading sequence data in R
- Guanine-Cytosine content analysis and basics of DNA sequence statistics
- Pairwise sequence alignment of Protein or DNA sequences
- DNA sequence analysis and determining DNA open reading frames
- Reading Fasta using SequinR
- Querying NCBI database in R
- UniProt Protein Sequence Retrieval in R
- Gene finding: Finding Start and Stop codons using R
- Retrieving a list of sequences from UniProt
- Computing scoring matrices for amino acids and long pairwise alignment in R
- Calculating genetic distances between protein sequences
- Differential expression analyses of RNA-seq